Chexnet: Radiologist-level pneumonia detection on chest x-rays with deep learning. Comput. \end{aligned} \end{aligned}$$, $$\begin{aligned} \begin{aligned} U_{i}(t+1)&= \frac{1}{1!} Automatic diagnosis of COVID-19 with MCA-inspired TQWT-based HGSO was ranked second with 146 and 87 selected features from Dataset 1 and Dataset 2, respectively. & Mahmoud, N. Feature selection based on hybrid optimization for magnetic resonance imaging brain tumor classification and segmentation. Moreover, other COVID-19 positive images were added by the Italian Society of Medical and Interventional Radiology (SIRM) COVID-19 Database45. The predator uses the Weibull distribution to improve the exploration capability. Hence, the FC memory is applied during updating the prey locating in the second step of the algorithm to enhance the exploitation stage. Figure5, shows that FO-MPA shows an efficient and faster convergence than the other optimization algorithms on both datasets. Accordingly, the FC is an efficient tool for enhancing the performance of the meta-heuristic algorithms by considering the memory perspective during updating the solutions. The updating operation repeated until reaching the stop condition. For example, Lambin et al.7 proposed an efficient approach called Radiomics to extract medical image features. Appl. Therefore, several pre-trained models have won many international image classification competitions such as VGGNet24, Resnet25, Nasnet26, Mobilenet27, Inception28 and Xception29. Acharya et al.11 applied different FS methods to classify Alzheimers disease using MRI images. MPA simulates the main aim for most creatures that is searching for their foods, where a predator contiguously searches for food as well as the prey. We have used RMSprop optimizer for weight updates, cross entropy loss function and selected learning rate as 0.0001. kharrat and Mahmoud32proposed an FS method based on a hybrid of Simulated Annealing (SA) and GA to classify brain tumors using MRI. CAS In Proceedings of the IEEE Conference on computer vision and pattern recognition workshops, 806813 (2014). To segment brain tissues from MRI images, Kong et al.17 proposed an FS method using two methods, called a discriminative clustering method and the information theoretic discriminative segmentation. Automatic segmentation and classification for antinuclear antibody Softw. [PDF] Detection and Severity Classification of COVID-19 in CT Images Software available from tensorflow. Two real datasets about COVID-19 patients are studied in this paper. Knowl. Machine Learning Performances for Covid-19 Images Classification based They were also collected frontal and lateral view imagery and metadata such as the time since first symptoms, intensive care unit (ICU) status, survival status, intubation status, or hospital location. Classification of Covid-19 X-Ray Images Using Fuzzy Gabor Filter and Interobserver and Intraobserver Variability in the CT Assessment of Sci. Epub 2022 Mar 3. 4a, the SMA was considered as the fastest algorithm among all algorithms followed by BPSO, FO-MPA, and HHO, respectively, while MPA was the slowest algorithm. New machine learning method for image-based diagnosis of COVID-19 - PLOS Netw. Also, in12, an Fs method based on SVM was proposed to detect Alzheimers disease from SPECT images. Internet Explorer). Evaluation outcomes showed that GA based FS methods outperformed traditional approaches, such as filter based FS and traditional wrapper methods. [PDF] COVID-19 Image Data Collection | Semantic Scholar COVID-19 image classification using deep features and fractional-order marine predators algorithm Authors. J. Clin. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition12511258 (2017). youngsoul/pyimagesearch-covid19-image-classification - GitHub Pool layers are used mainly to reduce the inputs size, which accelerates the computation as well. This study aims to improve the COVID-19 X-ray image classification using feature selection technique by the regression mutual information deep convolution neuron networks (RMI Deep-CNNs). To obtain However, WOA showed the worst performances in these measures; which means that if it is run in the same conditions several times, the same results will be obtained. Automatic CNN-based Chest X-Ray (CXR) image classification for detecting Covid-19 attracted so much attention. Early diagnosis, timely treatment, and proper confinement of the infected patients are some possible ways to control the spreading of . and pool layers, three fully connected layers, the last one performs classification. Objective: To help improve radiologists' efficacy of disease diagnosis in reading computed tomography (CT) images, this study aims to investigate the feasibility of applying a modified deep learning (DL) method as a new strategy to automatically segment disease-infected regions and predict disease severity. PDF Classification of Covid-19 and Other Lung Diseases From Chest X-ray Images Biocybern. Cohen, J.P., Morrison, P. & Dao, L. Covid-19 image data collection. It also shows that FO-MPA can select the smallest subset of features, which reflects positively on performance. Computational image analysis techniques play a vital role in disease treatment and diagnosis. volume10, Articlenumber:15364 (2020) Covid-19 Classification Using Deep Learning in Chest X-Ray Images Abstract: Covid-19 virus, which has emerged in the Republic of China in an undetermined cause, has affected the whole world quickly. Furthermore, deep learning using CNN is considered one of the best choices in medical imaging applications20, especially classification. In this paper, after applying Chi-square, the feature vector is minimized for both datasets from 51200 to 2000. Vis. Also, some image transformations were applied, such as rotation, horizontal flip, and scaling. The dataset consists of 21,165 chest X-ray (CXR) COVID-19 images distributed on four categories which are COVID19, lung opacity, viral pneumonia, and NORMAL (Non-COVID). MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features, Detection and analysis of COVID-19 in medical images using deep learning techniques, Cov-caldas: A new COVID-19 chest X-Ray dataset from state of Caldas-Colombia, Deep learning in veterinary medicine, an approach based on CNN to detect pulmonary abnormalities from lateral thoracic radiographs in cats, COVID-Net: a tailored deep convolutional neural network design for detection of COVID-19 cases from chest X-ray images, ANFIS-Net for automatic detection of COVID-19, A multi-scale gated multi-head attention depthwise separable CNN model for recognizing COVID-19, Validating deep learning inference during chest X-ray classification for COVID-19 screening, Densely attention mechanism based network for COVID-19 detection in chest X-rays, https://www.who.int/emergencies/diseases/novel-coronavirus-2019/situation-reports/, https://github.com/ieee8023/covid-chestxray-dataset, https://stanfordmlgroup.github.io/projects/chexnet, https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia, https://www.sirm.org/en/category/articles/covid-19-database/, https://drive.google.com/file/d/1-oK-eeEgdCMCnykH364IkAK3opmqa9Rvasx/view?usp=sharing, https://doi.org/10.1016/j.irbm.2019.10.006, https://research.googleblog.com/2017/11/automl-for-large-scaleimage.html, https://doi.org/10.1016/j.engappai.2020.103662, https://www.sirm.org/category/senza-categoria/covid-19/, https://doi.org/10.1016/j.future.2020.03.055, http://creativecommons.org/licenses/by/4.0/, Skin cancer detection using ensemble of machine learning and deep learning techniques, Plastic pollution induced by the COVID-19: Environmental challenges and outlook, An Inclusive Survey on Marine Predators Algorithm: Variants andApplications, A Multi-strategy Improved Outpost and Differential Evolution Mutation Marine Predators Algorithm for Global Optimization, A light-weight convolutional Neural Network Architecture for classification of COVID-19 chest X-Ray images. Furthermore, using few hundreds of images to build then train Inception is considered challenging because deep neural networks need large images numbers to work efficiently and produce efficient features. Cauchemez, S. et al. It is also noted that both datasets contain a small number of positive COVID-19 images, and up to our knowledge, there is no other sufficient available published dataset for COVID-19. 43, 635 (2020). One of the main disadvantages of our approach is that its built basically within two different environments. Automated detection of covid-19 cases using deep neural networks with x-ray images. The . 10, 10331039 (2020). Fractional Differential Equations: An Introduction to Fractional Derivatives, Fdifferential Equations, to Methods of their Solution and Some of Their Applications Vol. 35, 1831 (2017). PubMedGoogle Scholar. If the random solution is less than 0.2, it converted to 0 while the random solution becomes 1 when the solutions are greater than 0.2. For instance,\(1\times 1\) conv. PubMed ), such as \(5\times 5\), \(3 \times 3\), \(1 \times 1\). In this paper, we try to integrate deep transfer-learning-based methods, along with a convolutional block attention module (CBAM), to focus on the relevant portion of the feature maps to conduct an image-based classification of human monkeypox disease. One of the drawbacks of pre-trained models, such as Inception, is that its architecture required large memory requirements as well as storage capacity (92 M.B), which makes deployment exhausting and a tiresome task. Highlights COVID-19 CT classification using chest tomography (CT) images. This stage can be mathematically implemented as below: In Eq. After feature extraction, we applied FO-MPA to select the most significant features. Feature selection based on gaussian mixture model clustering for the classification of pulmonary nodules based on computed tomography. He, K., Zhang, X., Ren, S. & Sun, J. In my thesis project, I developed an image classification model to detect COVID-19 on chest X-ray medical data using deep learning models such . Also, it has killed more than 376,000 (up to 2 June 2020) [Coronavirus disease (COVID-2019) situation reports: (https://www.who.int/emergencies/diseases/novel-coronavirus-2019/situation-reports/)]. Corona Virus lung infected X-Ray Images accessible by Kaggle a complete 590 images, which classified in 2 classes: typical and Covid-19. Mutation: A mutation refers to a single change in a virus's genome (genetic code).Mutations happen frequently, but only sometimes change the characteristics of the virus. 2. 51, 810820 (2011). A Review of Deep Learning Imaging Diagnostic Methods for COVID-19 They applied the SVM classifier for new MRI images to segment brain tumors, automatically. Negative COVID-19 images were collected from another Chest X-ray Kaggle published dataset43. Afzali, A., Mofrad, F.B. Classification of COVID19 using Chest X-ray Images in Keras 4.6 33 ratings Share Offered By In this Guided Project, you will: Learn to Build and Train the Convolutional Neural Network using Keras with Tensorflow as Backend Learn to Visualize Data in Matplotlib Learn to make use of the Trained Model to Predict on a New Set of Data 2 hours Health Inf. Softw. Future Gener. Number of extracted feature and classification accuracy by FO-MPA compared to other CNNs on dataset 1 (left) and on dataset 2 (right). Arjun Sarkar - Doctoral Researcher - Leibniz Institute for Natural The Marine Predators Algorithm (MPA)is a recently developed meta-heuristic algorithm that emulates the relation among the prey and predator in nature37. In this paper, each feature selection algorithm were exposed to select the produced feature vector from Inception aiming at selecting only the most relevant features. Dhanachandra, N. & Chanu, Y. J. All authors discussed the results and wrote the manuscript together. & Wang, W. Medical image segmentation using fruit fly optimization and density peaks clustering. \(Fit_i\) denotes a fitness function value. Although outbreaks of SARS and MERS had confirmed human to human transmission3, they had not the same spread speed and infection power of the new coronavirus (COVID-19). They used different images of lung nodules and breast to evaluate their FS methods. Google Scholar. Biomed. (20), \(FAD=0.2\), and W is a binary solution (0 or 1) that corresponded to random solutions. 79, 18839 (2020). Therefore, in this paper, we propose a hybrid classification approach of COVID-19. In the last two decades, two famous types of coronaviruses SARS-CoV and MERS-CoV had been reported in 2003 and 2012, in China, and Saudi Arabia, respectively3. They employed partial differential equations for extracting texture features of medical images. The results indicate that all CNN-based architectures outperform the ViT-based architecture in the binary classification of COVID-19 using CT images. Future Gener. Tree based classifier are the most popular method to calculate feature importance to improve the classification since they have high accuracy, robustness, and simple38. & Pouladian, M. Feature selection for contour-based tuberculosis detection from chest x-ray images. Lilang Zheng, Jiaxuan Fang, Xiaorun Tang, Hanzhang Li, Jiaxin Fan, Tianyi Wang, Rui Zhou, Zhaoyan Yan: PVT-COV19D: COVID-19 Detection Through Medical Image Classification Based on Pyramid Vision Transformer. 132, 8198 (2018). Besides, the used statistical operations improve the performance of the FO-MPA algorithm because it supports the algorithm in selecting only the most important and relevant features. Heidari, A. HIGHLIGHTS who: Qinghua Xie and colleagues from the Te Afliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China have published the Article: Automatic Segmentation and Classification for Antinuclear Antibody Images Based on Deep Learning, in the Journal: Computational Intelligence and Neuroscience of 14/08/2022 what: Terefore, the authors . 0.9875 and 0.9961 under binary and multi class classifications respectively. Kharrat, A. They achieved 98.08 % and 96.51 % of accuracy and F-Score, respectively compared to our approach with 98.77 % and 98.2% for accuracy and F-Score, respectively. We do not present a usable clinical tool for COVID-19 diagnosis, but offer a new, efficient approach to optimize deep learning-based architectures for medical image classification purposes. The main contributions of this study are elaborated as follows: Propose an efficient hybrid classification approach for COVID-19 using a combination of CNN and an improved swarm-based feature selection algorithm. 95, 5167 (2016). They were manually aggregated from various web based repositories into a machine learning (ML) friendly format with accompanying data loader code. Coronavirus Disease (COVID-19): A primer for emergency physicians (2020) Summer Chavez et al. Robustness-driven feature selection in classification of fibrotic interstitial lung disease patterns in computed tomography using 3d texture features. (14)(15) to emulate the motion of the first half of the population (prey) and Eqs. Zhang et al.16 proposed a kernel feature selection method to segment brain tumors from MRI images. J. Med. Decaf: A deep convolutional activation feature for generic visual recognition. Classification of COVID19 using Chest X-ray Images in Keras - Coursera Fung, G. & Stoeckel, J. Svm feature selection for classification of spect images of alzheimers disease using spatial information. Dr. Usama Ijaz Bajwa na LinkedIn: #efficientnet #braintumor #mri 2 (right). Adv. Therefore in MPA, for the first third of the total iterations, i.e., \(\frac{1}{3}t_{max}\)). arXiv preprint arXiv:2004.07054 (2020). Frontiers | AI-Based Image Processing for COVID-19 Detection in Chest Performance analysis of neural networks for classification of medical images with wavelets as a feature extractor. The first one is based on Python, where the deep neural network architecture (Inception) was built and the feature extraction part was performed. The results are the best achieved on these datasets when compared to a set of recent feature selection algorithms. (24). Image Underst. Get the most important science stories of the day, free in your inbox. Whereas the worst one was SMA algorithm. In this experiment, the selected features by FO-MPA were classified using KNN. For more analysis of feature selection algorithms based on the number of selected features (S.F) and consuming time, Fig. The results showed that the proposed approach showed better performances in both classification accuracy and the number of extracted features that positively affect resource consumption and storage efficiency. For the exploration stage, the weibull distribution has been applied rather than Brownian to bost the performance of the predator in stage 2 and the prey velocity in stage 1 based on the following formula: Where k, and \(\zeta\) are the scale and shape parameters. A NOVEL COMPARATIVE STUDY FOR AUTOMATIC THREE-CLASS AND FOUR-CLASS COVID-19 CLASSIFICATION ON X-RAY IMAGES USING DEEP LEARNING: Authors: Yaar, H. Ceylan, M. Keywords: Convolutional neural networks Covid-19 Deep learning Densenet201 Inceptionv3 Local binary pattern Local entropy X-ray chest classification Xception: Issue Date: 2022: Publisher: Springer Science and Business Media LLC Online. Mobilenets: Efficient convolutional neural networks for mobile vision applications. Szegedy, C. et al. In our experiment, we randomly split the data into 70%, 10%, and 20% for training, validation, and testing sets, respectively. Comput. Experimental results have shown that the proposed Fuzzy Gabor-CNN algorithm attains highest accuracy, Precision, Recall and F1-score when compared to existing feature extraction and classification techniques. Hashim, F. A., Houssein, E. H., Mabrouk, M. S., Al-Atabany, W. & Mirjalili, S. Henry gas solubility optimization: a novel physics-based algorithm. Regarding the consuming time as in Fig. FC provides a clear interpretation of the memory and hereditary features of the process. An image segmentation approach based on fuzzy c-means and dynamic particle swarm optimization algorithm. Syst. In this paper, we apply a convolutional neural network (CNN) to extract features from COVID-19 X-Ray images. . A. et al. In some cases (as exists in this work), the dataset is limited, so it is not sufficient for building & training a CNN. Faramarzi et al.37 divided the agents for two halves and formulated Eqs. Besides, all algorithms showed the same statistical stability in STD measure, except for HHO and HGSO. Appl. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. M.A.E. 111, 300323. As seen in Table3, on Dataset 1, the FO-MPA outperformed the other algorithms in the mean of fitness value as it achieved the smallest average fitness function value followed by SMA, HHO, HGSO, SCA, BGWO, MPA, and BPSO, respectively whereas, the SGA and WOA showed the worst results. The focus of this study is to evaluate and examine a set of deep learning transfer learning techniques applied to chest radiograph images for the classification of COVID-19, normal (healthy), and pneumonia. EMRes-50 model . Chong et al.8 proposed an FS model, called Robustness-Driven FS (RDFS) to select futures from lung CT images to classify the patterns of fibrotic interstitial lung diseases. 11314, 113142S (International Society for Optics and Photonics, 2020). Article Four measures for the proposed method and the compared algorithms are listed. Improving the ranking quality of medical image retrieval using a genetic feature selection method. implemented the FO-MPA swarm optimization and prepared the related figures and manuscript text. Average of the consuming time and the number of selected features in both datasets. Article Afzali et al.15 proposed an FS method based on principal component analysis and contour-based shape descriptors to detect Tuberculosis from lung X-Ray Images. Covid-19 Classification Using Deep Learning in Chest X-Ray Images In14, the authors proposed an FS method based on a convolutional neural network (CNN) to detect pneumonia from lung X-ray images. contributed to preparing results and the final figures. Generally, the proposed FO-MPA approach showed satisfying performance in both the feature selection ratio and the classification rate. In this paper, we proposed a novel COVID-19 X-ray classification approach, which combines a CNN as a sufficient tool to extract features from COVID-19 X-ray images. As a result, the obtained outcomes outperformed previous works in terms of the models general performance measure. (23), the general formulation for the solutions of FO-MPA based on FC memory perspective can be written as follows: After checking the previous formula, it can be detected that the motion of the prey becomes based on some terms from the previous solutions with a length of (m), as depicted in Fig. This paper reviews the recent progress of deep learning in COVID-19 images applications from five aspects; Firstly, 33 COVID-19 datasets and data enhancement methods are introduced; Secondly, COVID-19 classification methods . Stage 3: This stage executed on the last third of the iteration numbers (\(t>\frac{2}{3}t_{max}\)) where based on the following formula: Eddy formation and Fish Aggregating Devices effect: Faramarzi et al.37 considered the external impacts from the environment, such as the eddy formation or Fish Aggregating Devices (FADs) effects to avoid the local optimum solutions. In Eq. Propose a novel robust optimizer called Fractional-order Marine Predators Algorithm (FO-MPA) to select efficiently the huge feature vector produced from the CNN. Google Scholar. Continuing on my commitment to share small but interesting things in Google Cloud, this time I created a model for a https://doi.org/10.1038/s41598-020-71294-2, DOI: https://doi.org/10.1038/s41598-020-71294-2. This combination should achieve two main targets; high performance and resource consumption, storage capacity which consequently minimize processing time. Such methods might play a significant role as a computer-aided tool for image-based clinical diagnosis soon. where CF is the parameter that controls the step size of movement for the predator. Multiclass Convolution Neural Network for Classification of COVID-19 CT Classification of COVID-19 X-ray images with Keras and its - Medium The proposed IMF approach successfully achieves two important targets, selecting small feature numbers with high accuracy. Key Definitions. Coronavirus disease (Covid-19) is an infectious disease that attacks the respiratory area caused by the severe acute . & Baby, C.J. Emphysema medical image classification using fuzzy decision tree with fuzzy particle swarm optimization clustering. COVID-19 Detection via Image Classification using Deep Learning on (15) can be reformulated to meet the special case of GL definition of Eq. New Images of Novel Coronavirus SARS-CoV-2 Now Available In the current work, the values of k, and \(\zeta\) are set to 2, and 2, respectively. The results are the best achieved compared to other CNN architectures and all published works in the same datasets. How- individual class performance. Sahlol, A.T., Yousri, D., Ewees, A.A. et al. Credit: NIAID-RML 22, 573577 (2014). J. With the help of numerous algorithms in AI, modern COVID-19 cases can be detected and managed in a classified framework. Accordingly, that reflects on efficient usage of memory, and less resource consumption. 40, 2339 (2020). It classifies the chest X-ray images into three categories that includes Covid-19, Pneumonia and normal. Mirjalili, S., Mirjalili, S. M. & Lewis, A. Grey wolf optimizer. Li et al.34 proposed a self-adaptive bat algorithm (BA) to address two problems in lung X-ray images, rebalancing, and feature selection. 517 PDF Ensemble of Patches for COVID-19 X-Ray Image Classification Thiago Chen, G. Oliveira, Z. Dias Medicine Google Research, https://research.googleblog.com/2017/11/automl-for-large-scaleimage.html, Blog (2017). Affectation index and severity degree by COVID-19 in Chest X-ray images (22) can be written as follows: By taking into account the early mentioned relation in Eq. Imag. On January 20, 2023, Japanese Prime Minister Fumio Kishida announced that the country would be downgrading the COVID-19 classification. Nguyen, L.D., Lin, D., Lin, Z. 2020-09-21 . (2) calculated two child nodes. The shape of the output from the Inception is (5, 5, 2048), which represents a feature vector of size 51200. Extensive evaluation experiments had been carried out with a collection of two public X-ray images datasets. Automated Segmentation of Covid-19 Regions From Lung Ct Images Using The COVID-19 pandemic has been having a severe and catastrophic effect on humankind and is being considered the most crucial health calamity of the century. Contribute to hellorp1990/Covid-19-USF development by creating an account on GitHub. Fusing clinical and image data for detecting the severity level of 6, right), our approach still provides an overall accuracy of 99.68%, putting it first with a slight advantage over MobileNet (99.67 %). Methods Med. Podlubny, I. Since its structure consists of some parallel paths, all the paths use padding of 1 pixel to preserve the same height & width for the inputs and the outputs. Image segmentation is a necessary image processing task that applied to discriminate region of interests (ROIs) from the area of outsides. Al-qaness, M. A., Ewees, A. By achieving 98.7%, 98.2% and 99.6%, 99% of classification accuracy and F-Score for dataset 1 and dataset 2, respectively, the proposed approach outperforms several CNNs and all recent works on COVID-19 images. Whereas, the worst algorithm was BPSO. This means we can use pre-trained model weights, leveraging all of the time and data it took for training the convolutional part, and just remove the FCN layer. However, some of the extracted features by CNN might not be sufficient, which may affect negatively the quality of the classification images. PVT-COV19D: COVID-19 Detection Through Medical Image Classification Based on Pyramid Vision Transformer. Based on54, the later step reduces the memory requirements, and improve the efficiency of the framework. 101, 646667 (2019). For both datasets, the Covid19 images were collected from patients with ages ranging from 40-84 from both genders. All data used in this paper is available online in the repository, [https://github.com/ieee8023/covid-chestxray-dataset], [https://stanfordmlgroup.github.io/projects/chexnet], [https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia] and [https://www.sirm.org/en/category/articles/covid-19-database/].
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